Code overview:
For an overview of all the publically available code please click here.

Publication overview:
A complete overview is available on our public Mendeley page.

2024

• Selena Huisman, Matteo Maspero, Marielle Philippens, Joost Verhoeff, and Szabolcs David. Validation of SynthSeg segmentation performance on CT using paired MRI from radiotherapy patients. NeuroImage, 2024.
• Maureen Groot Koerkamp, Peter Stijnman, Antonetta Houweling, Cornel Zachiu, Alexis Kotte, and Bas Raaymakers. Automated dose evaluation on daily cone-beam computed tomography for breast cancer patients. Radiotherapy and Oncology, 2024.
• Hongyan Liu, Edwin Versteeg, Miha Fuderer, Oscar Heide, Martin B. Schilder, Cornelis A. T. Berg, and Alessandro Sbrizzi. Time‐efficient, high‐resolution 3T whole‐brain relaxometry using Cartesian 3D MR Spin TomogrAphy in Time‐Domain (MR‐STAT) with cerebrospinal fluid suppression. Magnetic Resonance in Medicine, 2024.
• Thomas E. Olausson, Maarten L. Terpstra, Niek R. F. Huttinga, Casper Beijst, Niels Blanken, Teresa Correia, Dominika Suchá, Birgitta K. Velthuis, Cornelis A. T. Berg, and Alessandro Sbrizzi. Free-Running Time-Resolved First-Pass Myocardial Perfusion Using a Multi-Scale Dynamics Decomposition: CMR-MOTUS. arXiv, 2024.
• Miha Fuderer, Barbara Wichtmann, Fabio Crameri, Nandita M. Souza, Bettina Baeßler, Vikas Gulani, Meiyun Wang, Dirk Poot, Ruud Boer, Matt Cashmore, Kathryn E. Keenan, Dan Ma, Carolin Pirkl, Nico Sollmann, Sebastian Weingärtner, Stefano Mandija, and Xavier Golay. Color‐map recommendation for MR relaxometry maps. Magnetic Resonance in Medicine, 2024.
• Evi M.C. Huijben, Maarten L. Terpstra, Arthur Jr. Galapon, Suraj Pai, Adrian Thummerer, Peter Koopmans, Manya Afonso, Maureen Eijnatten, Oliver Gurney-Champion, Zeli Chen, Yiwen Zhang, Kaiyi Zheng, Chuanpu Li, Haowen Pang, Chuyang Ye, Runqi Wang, Tao Song, Fuxin Fan, Jingna Qiu, Yixing Huang, Juhyung Ha, Jong Sung Park, Alexandra Alain-Beaudoin, Silvain Bériault, Pengxin Yu, Hongbin Guo, Zhanyao Huang, Gengwan Li, Xueru Zhang, Yubo Fan, Han Liu, Bowen Xin, Aaron Nicolson, Lujia Zhong, Zhiwei Deng, Gustav Müller-Franzes, Firas Khader, Xia Li, Ye Zhang, Cédric Hémon, Valentin Boussot, Zhihao Zhang, Long Wang, Lu Bai, Shaobin Wang, Derk Mus, Bram Kooiman, Chelsea A.H. Sargeant, Edward G.A. Henderson, Satoshi Kondo, Satoshi Kasai, Reza Karimzadeh, Bulat Ibragimov, Thomas Helfer, Jessica Dafflon, Zijie Chen, Enpei Wang, Zoltan Perko, and Matteo Maspero. Generating synthetic computed tomography for radiotherapy: SynthRAD2023 challenge report. Medical Image Analysis, 2024.
• Floris C.J. Reinders, Mark H.F. Savenije, Mischa Ridder, Matteo Maspero, Patricia A.H. Doornaert, Chris H.J. Terhaard, Cornelis P.J. Raaijmakers, Kaveh Zakeri, Nancy Y. Lee, Eric Aliotta, Aneesh Rangnekar, Harini Veeraraghavan, and Marielle E.P. Philippens. Automatic segmentation for magnetic resonance imaging guided individual elective lymph node irradiation in head and neck cancer patients. Physics and Imaging in Radiation Oncology, 2024.
• Michael J. B. McGrory, Edwin Versteeg, Alessandro Sbrizzi, Cornelis A. T. Berg, Dennis Klomp, and Jeroen C. W. Siero. Fast and silent MRI using nonlinear gradient fields at the ultrasonic gradient switching frequency of 20 kHz with a Point Spread Function framework reconstruction. Magnetic Resonance in Medicine, 2024.
• T. G. Meerbothe, S. Florczak, C. A. T. Berg, R. Levato, and S. Mandija. A reusable 3D printed brain‐like phantom for benchmarking electrical properties tomography reconstructions. Magnetic Resonance in Medicine, 2024.
• Gabrio Rizzuti, Tim Schakel, Niek R. F. Huttinga, Jan Willem Dankbaar, Tristan Leeuwen, and Alessandro Sbrizzi. Towards retrospective motion correction and reconstruction for clinical 3D brain MRI protocols with a reference contrast. Magnetic Resonance Materials in Physics, Biology and Medicine, 2024.
• Oscar Heide, Cornelis A. T. Berg, and Alessandro Sbrizzi. GPU‐accelerated Bloch simulations and MR‐STAT reconstructions using the Julia programming language. Magnetic Resonance in Medicine, 2024.
• Iris D. Kolenbrander, Matteo Maspero, Allard A. Hendriksen, Ryan Pollitt, Jochem R. N. Zyp, Cornelis A. T. Berg, Josien P. W. Pluim, and Maureen A. J. M. Eijnatten. Deep‐learning‐based joint rigid and deformable contour propagation for magnetic resonance imaging‐guided prostate radiotherapy. Medical Physics, 2024.
• Edwin Versteeg, Hongyan Liu, Oscar Heide, Miha Fuderer, Cornelis A. T. Berg, and Alessandro Sbrizzi. High SNR full brain relaxometry at 7T by accelerated MR‐STAT. Magnetic Resonance in Medicine, 2024.
• David G. J. Heesterbeek, Max H. C. Riel, Tristan Leeuwen, Cornelis A. T. Berg, and Alessandro Sbrizzi. Data-Driven Discovery of Mechanical Models Directly From MRI Spectral Data. IEEE Transactions on Computational Imaging, 2024.
• Edwin Versteeg, Kyung Min Nam, Dennis W. J. Klomp, Alex A. Bhogal, Jeroen C. W. Siero, and Jannie P. Wijnen. A silent echo‐planar spectroscopic imaging readout with high spectral bandwidth MRSI using an ultrasonic gradient axis. Magnetic Resonance in Medicine, 2024.
• Sabrina Zumbo, Stefano Mandija, Ettore F. Meliadò, Peter Stijnman, Thierry G. Meerbothe, Cornelis A.T. Berg, Tommaso Isernia, and Martina T. Bevacqua. Unrolled Optimization via Physics-Assisted Convolutional Neural Network for MR-Based Electrical Properties Tomography: A Numerical Investigation. IEEE Open Journal of Engineering in Medicine and Biology, 2024.

2023

• Luuk Jacobs, Stefano Mandija, Hongyan Liu, Cornelis A. T. Berg, Alessandro Sbrizzi, and Matteo Maspero. Generalizable synthetic MRI with physics‐informed convolutional networks. Medical Physics, 2023.
• Hongyan Liu, Oscar Heide, Edwin Versteeg, Martijn Froeling, Miha Fuderer, Fei Xu, Cornelis A. T. Berg, and Alessandro Sbrizzi. A three‐dimensional Magnetic Resonance Spin Tomography in Time‐domain protocol for high‐resolution multiparametric quantitative magnetic resonance imaging. NMR in Biomedicine, 2023.
• T. G. Meerbothe, E. F. Meliado, P. R. S. Stijnman, C. A. T. Berg, and S. Mandija. A database for MR‐based electrical properties tomography with in silico brain data—ADEPT. Magnetic Resonance in Medicine, 2023.
• Maarten Lennart Terpstra. Real-time MRI-guided radiotherapy with deep learning. Utrecht University Library, 2023.
• Miha Fuderer, Oscar Heide, Hongyan Liu, Cornelis A. T. Berg, and Alessandro Sbrizzi. Water diffusion and T2 quantification in transient‐state MRI: the effect of RF pulse sequence. NMR in Biomedicine, 2023.
• Niek R.F. Huttinga, Tom Bruijnen, Cornelis A.T. Berg, and Alessandro Sbrizzi. Gaussian Processes for real-time 3D motion and uncertainty estimation during MR-guided radiotherapy. Medical Image Analysis, 2023.
• Lotte Nijskens, Cornelis A.T. Berg, Joost J.C. Verhoeff, and Matteo Maspero. Exploring contrast generalisation in deep learning-based brain MRI-to-CT synthesis. Physica Medica, 2023.
• Maarten L. Terpstra, Matteo Maspero, Joost J. C. Verhoeff, and Cornelis A. T. Berg. Accelerated respiratory‐resolved 4D‐MRI with separable spatio‐temporal neural networks. Medical Physics, 2023.
• Niek R F Huttinga, Osman Akdag, Martin F Fast, Joost J C Verhoeff, Firdaus A A Mohamed Hoesein, Cornelis A T Berg, Alessandro Sbrizzi, and Stefano Mandija. Real-time myocardial landmark tracking for MRI-guided cardiac radio-ablation using Gaussian Processes. Physics in Medicine & Biology, 2023.
• Kyu‐Jin Jung, Stefano Mandija, Chuanjiang Cui, Jun‐Hyeong Kim, Mohammed A. Al‐masni, Thierry G. Meerbothe, Mina Park, Cornelis A. T. Berg, and Dong‐Hyun Kim. Data‐driven electrical conductivity brain imaging using 3 T MRI. Human Brain Mapping, 2023.
• Adrian Thummerer, Erik Bijl, Arthur Galapon, Joost J. C. Verhoeff, Johannes A. Langendijk, Stefan Both, Cornelis (Nico) A. T. Berg, and Matteo Maspero. SynthRAD2023 Grand Challenge dataset: Generating synthetic CT for radiotherapy. Medical Physics, 2023.
• Ali Siahkoohi, Gabrio Rizzuti, Rafael Orozco, and Felix J. Herrmann. Reliable amortized variational inference with physics-based latent distribution correction. GEOPHYSICS, 2023.
• Jiying Dai, Mark Gosselink, Tijl Antonius Velden, Ettore Flavio Meliadò, Alexander Jan Eberhard Raaijmakers, and Dennis Wilhelmus Johannes Klomp. An RF coil design to enable quintuple nuclear whole‐brain MRI. Magnetic Resonance in Medicine, 2023.
• Enrica Seravalli, Michelle Sierts, Eric Brand, Matteo Maspero, Szabolcs David, Mariellen E.P. Philippens, Eduward H.J. Voormolen, and Joost J.C. Verhoeff. Dosimetric feasibility of direct post-operative MR-Linac-based stereotactic radiosurgery for resection cavities of brain metastases. Radiotherapy and Oncology, 2023.
• Mathijs W. I. Kikken, Bart R. Steensma, Cornelis A. T. Berg, and Alexander J. E. Raaijmakers. Multi‐echo MR thermometry in the upper leg at 7 T using near‐harmonic 2D reconstruction for initialization. Magnetic Resonance in Medicine, 2023.
• Max H. C. Riel, Tristan Leeuwen, Cornelis A. T. Berg, and Alessandro Sbrizzi. Time-Resolved Reconstruction of Motion, Force, and Stiffness Using Spectro-Dynamic MRI. IEEE Transactions on Computational Imaging, 2023.

2022

• David G.J. Heesterbeek, Kirsten Koolstra, Matthias J.P. Osch, Martin B. Gijzen, Franciscus M. Vos, and Martijn A. Nagtegaal. Mitigating undersampling errors in MR fingerprinting by sequence optimization. Magnetic Resonance in Medicine, 2022.
• Hongyan Liu, Oscar Heide, Stefano Mandija, Cornelis A. T. Berg, and Alessandro Sbrizzi. Acceleration Strategies for MR-STAT: Achieving High-Resolution Reconstructions on a Desktop PC Within 3 Minutes. IEEE Transactions on Medical Imaging, 2022.
• Rosie J. Goodburn, Marielle E. P. Philippens, Thierry L. Lefebvre, Aly Khalifa, Tom Bruijnen, Joshua N. Freedman, David E. J. Waddington, Eyesha Younus, Eric Aliotta, Gabriele Meliadò, Teo Stanescu, Wajiha Bano, Ali Fatemi‐Ardekani, Andreas Wetscherek, Uwe Oelfke, Nico Berg, Ralph P. Mason, Petra J. Houdt, James M. Balter, and Oliver J. Gurney‐Champion. The future of MRI in radiation therapy: Challenges and opportunities for the MR community. Magnetic Resonance in Medicine, 2022.
• Sarah M. Jacobs, Edwin Versteeg, Anja G. Kolk, Leonie N. C. Visser, Ícaro A. F. Oliveira, Emiel Maren, Dennis W. J. Klomp, and Jeroen C. W. Siero. Image quality and subject experience of quiet T1-weighted 7-T brain imaging using a silent gradient coil. European Radiology Experimental, 2022.
• Ali Siahkoohi, Gabrio Rizzuti, and Felix J. Herrmann. Deep Bayesian inference for seismic imaging with tasks. GEOPHYSICS, 2022.
• Maarten L. Terpstra, Matteo Maspero, Alessandro Sbrizzi, and Cornelis A.T. Berg. ⊥-loss: A symmetric loss function for magnetic resonance imaging reconstruction and image registration with deep learning. Medical Image Analysis, 2022.
• Edwin Versteeg, Dennis W. J. Klomp, and Jeroen C. W. Siero. Accelerating Brain Imaging Using a Silent Spatial Encoding Axis. Magnetic Resonance in Medicine, 2022.
• Stefan E Zijlema, Wico Breimer, Mark W J M Gosselink, Tom Bruijnen, Catalina S Arteaga Castro, Rob H N Tijssen, Jan J W Lagendijk, Marielle E P Philippens, and Cornelis A T Berg. A mask-compatible, radiolucent, 8-channel head and neck receive array for MRI-guided radiotherapy treatments and pre-treatment simulation. Physics in Medicine & Biology, 2022.
• Niek R. F. Huttinga, Tom Bruijnen, Cornelis A. T. Van Den Berg, and Alessandro Sbrizzi. Real-Time Non-Rigid 3D Respiratory Motion Estimation for MR-Guided Radiotherapy Using MR-MOTUS. IEEE Transactions on Medical Imaging, 2022.
• Max H. C. Riel, Niek R. F. Huttinga, and Alessandro Sbrizzi. Spectro-Dynamic MRI: Characterizing Mechanical Systems on a Millisecond Scale. IEEE Access, 2022.
• Gabrio Rizzuti, Alessandro Sbrizzi, and Tristan Leeuwen. Joint Retrospective Motion Correction and Reconstruction for Brain MRI With a Reference Contrast. IEEE Transactions on Computational Imaging, 2022.

2021

• Bianca A.W. Hoeben, Enrica Seravalli, Amber M.L. Wood, Mirjam Bosman, Witold P. Matysiak, John H. Maduro, Astrid L.H.M.W. Lier, Matteo Maspero, Gijsbert H. Bol, and Geert O. Janssens. Influence of eye movement on lens dose and optic nerve target coverage during craniospinal irradiation. Clinical and Translational Radiation Oncology, 2021.
• Gabrio Rizzuti, Mathias Louboutin, Rongrong Wang, and Felix J. Herrmann. A dual formulation of wavefield reconstruction inversion for large-scale seismic inversion. GEOPHYSICS, 2021.
• Maarten L. Terpstra, Matteo Maspero, Tom Bruijnen, Joost J.C. Verhoeff, Jan J.W. Lagendijk, and Cornelis A.T. Berg. Real‐time 3D motion estimation from undersampled MRI using multi‐resolution neural networks. Medical Physics, 2021.
• Maria Francesca Spadea, Matteo Maspero, Paolo Zaffino, and Joao Seco. Deep learning based synthetic‐CT generation in radiotherapy and PET: A review. Medical Physics, 2021.
• Edwin Versteeg, Dennis W. J. Klomp, and Jeroen C. W. Siero. A silent gradient axis for soundless spatial encoding to enable fast and quiet brain imaging. Magnetic Resonance in Medicine, 2021.
• Bart R. Steensma, Ettore F. Meliadò, Peter Luijten, Dennis W. J. Klomp, Cornelis A. T. Berg, and Alexander J. E. Raaijmakers. SAR and temperature distributions in a database of realistic human models for 7 T cardiac imaging. NMR in Biomedicine, 2021.
• Peter R. S. Stijnman, M. Arcan Erturk, Cornelis A. T. Berg, and Alexander J. E. Raaijmakers. A single setup approach for the MRI‐based measurement and validation of the transfer function of elongated medical implants. Magnetic Resonance in Medicine, 2021.
• M L Groot Koerkamp, Y J M Hond, M Maspero, C Kontaxis, S Mandija, J E Vasmel, R K Charaghvandi, M E P Philippens, B Asselen, H J G D Bongard, S S Hackett, and A C Houweling. Synthetic CT for single-fraction neoadjuvant partial breast irradiation on an MRI-linac. Physics in Medicine & Biology, 2021.
• Max H. C. Riel, Zidan Yu, Shota Hodono, Ding Xia, Hersh Chandarana, Koji Fujimoto, and Martijn A. Cloos. Free‐breathing abdominal T1 mapping using an optimized MR fingerprinting sequence. NMR in Biomedicine, 2021.
• Edwin Versteeg, Tijl A. Velden, Carel C. Leeuwen, Martino Borgo, Erik R. Huijing, Arjan D. Hendriks, Jeroen Hendrikse, Dennis W. J. Klomp, and Jeroen C. W. Siero. A plug‐and‐play, lightweight, single‐axis gradient insert design for increasing spatiotemporal resolution in echo planar imaging‐based brain imaging. NMR in Biomedicine, 2021.
• Woutjan Branderhorst, Bart R. Steensma, Casper Beijst, Erik R. Huijing, Cezar Alborahal, Edwin Versteeg, Bjoern Weissler, David Schug, Pierre Gebhardt, Nicolas Gross-Weege, Florian Mueller, Karl Krueger, Thomas Dey, Harald Radermacher, Oliver Lips, Jan Lagendijk, Volkmar Schulz, Hugo W.A.M. Jong, and Dennis W.J. Klomp. Evaluation of the radiofrequency performance of a wide-bore 1.5 T positron emission tomography/magnetic resonance imaging body coil for radiotherapy planning. Physics and Imaging in Radiation Oncology, 2021.

2020

• Matteo Maspero, Laura G. Bentvelzen, Mark H.F. Savenije, Filipa Guerreiro, Enrica Seravalli, Geert O. Janssens, Cornelis A.T. Berg, and Marielle E.P. Philippens. Deep learning-based synthetic CT generation for paediatric brain MR-only photon and proton radiotherapy. Radiotherapy and Oncology, 2020.
• Ettore Flavio Meliadò, Alessandro Sbrizzi, Cornelis A. T. Berg, Peter R. Luijten, and Alexander J. E. Raaijmakers. Real‐time assessment of potential peak local specific absorption rate value without phase monitoring: Trigonometric maximization method for worst‐case local specific absorption rate determination. Magnetic Resonance in Medicine, 2020.
• Peter R. S. Stijnman, Stefano Mandija, Patrick S. Fuchs, Cornelis A. T. Berg, and Rob F. Remis. Transceive phase corrected 2D contrast source inversion‐electrical properties tomography. Magnetic Resonance in Medicine, 2020.
• T Bruijnen, O Heide, M P W Intven, S Mook, J J W Lagendijk, C A T Berg, and R H N Tijssen. Technical feasibility of magnetic resonance fingerprinting on a 1.5T MRI-linac. Physics in Medicine & Biology, 2020.
• Oscar Heide, Alessandro Sbrizzi, and Cornelis A. T. Berg. Accelerated MR-STAT Reconstructions Using Sparse Hessian Approximations. IEEE Transactions on Medical Imaging, 2020.
• Niek R. F. Huttinga, Tom Bruijnen, Cornelis A. T. Berg, and Alessandro Sbrizzi. Nonrigid 3D motion estimation at high temporal resolution from prospectively undersampled k‐space data using low‐rank MR‐MOTUS. Magnetic Resonance in Medicine, 2020.
• Stefan E Zijlema, Rob H N Tijssen, Luca Dijk, Sara L Hackett, Jochem W H Wolthaus, Wico Breimer, Jan J W Lagendijk, and Cornelis A T Berg. Improving the imaging performance of the 1.5 T MR-linac using a flexible, 32-channel, on-body receive array. Physics in Medicine & Biology, 2020.
• Maarten L Terpstra, Matteo Maspero, Federico d’Agata, Bjorn Stemkens, Martijn P W Intven, Jan J W Lagendijk, Cornelis A T Berg, and Rob H N Tijssen. Deep learning-based image reconstruction and motion estimation from undersampled radial k-space for real-time MRI-guided radiotherapy. Physics in Medicine & Biology, 2020.
• K.V. Annink, N.E. Aa, J. Dudink, T. Alderliesten, F. Groenendaal, M. Lequin, F.E. Jansen, K.S. Rhebergen, P. Luijten, J. Hendrikse, H.J.M. Hoogduin, E.R. Huijing, E. Versteeg, F. Visser, A.J.E. Raaijmakers, E.C. Wiegers, D.W.J. Klomp, J.P. Wijnen, and M.J.N.L. Benders. Introduction of Ultra-High-Field MR Imaging in Infants: Preparations and Feasibility. American Journal of Neuroradiology, 2020.
• Ettore Flavio Meliadò, Alessandro Sbrizzi, Cornelis A. T. Berg, Bart R. Steensma, Peter R. Luijten, and Alexander J. E. Raaijmakers. Conditional safety margins for less conservative peak local SAR assessment: A probabilistic approach. Magnetic Resonance in Medicine, 2020.
• R J M Navest, S Mandija, S E Zijlema, B Stemkens, A Andreychenko, J J W Lagendijk, and C A T Berg. The noise navigator for MRI-guided radiotherapy: an independent method to detect physiological motion. Physics in Medicine & Biology, 2020.
• Mark H. F. Savenije, Matteo Maspero, Gonda G. Sikkes, Jochem R. N. Zyp, Alexis N. T. J. Kotte, Gijsbert H. Bol, and Cornelis A. T. Berg. Clinical implementation of MRI-based organs-at-risk auto-segmentation with convolutional networks for prostate radiotherapy. Radiation Oncology, 2020.
• Jieying Wang, Maarten Terpstra, Jiří Kosinka, and Alexandru Telea. Quantitative Evaluation of Dense Skeletons for Image Compression. Information, 2020.
• Soraya Gavazzi, Cornelis A. T. Berg, Mark H. F. Savenije, H. Petra Kok, Peter Boer, Lukas J. A. Stalpers, Jan J. W. Lagendijk, Hans Crezee, and Astrid L. H. M. W. Lier. Deep learning‐based reconstruction of in vivo pelvis conductivity with a 3D patch‐based convolutional neural network trained on simulated MR data. Magnetic Resonance in Medicine, 2020.
• Matteo Maspero, Antonetta C. Houweling, Mark H.F. Savenije, Tristan C.F. Heijst, Joost J.C. Verhoeff, Alexis N.T.J. Kotte, and Cornelis A.T. Berg. A single neural network for cone-beam computed tomography-based radiotherapy of head-and-neck, lung and breast cancer. Physics and Imaging in Radiation Oncology, 2020.
• K.A.J. Eppenhof, M. Maspero, M.H.F. Savenije, J.C.J. Boer, J.R.N. Zyp, B.W. Raaymakers, A.J.E. Raaijmakers, M. Veta, C.A.T. Berg, and J.P.W. Pluim. Fast contour propagation for MR‐guided prostate radiotherapy using convolutional neural networks. Medical Physics, 2020.
• Oscar Heide, Alessandro Sbrizzi, Peter R. Luijten, and Cornelis A.T. Berg. High‐resolution in vivo MR‐STAT using a matrix‐free and parallelized reconstruction algorithm. NMR in Biomedicine, 2020.
• Niek R F Huttinga, Cornelis A T Berg, Peter R Luijten, and Alessandro Sbrizzi. MR-MOTUS: model-based non-rigid motion estimation for MR-guided radiotherapy using a reference image and minimal k-space data. Physics in Medicine & Biology, 2020.
• R J M Navest, S Mandija, T Bruijnen, B Stemkens, R H N Tijssen, A Andreychenko, J J W Lagendijk, and C A T Berg. The noise navigator: a surrogate for respiratory-correlated 4D-MRI for motion characterization in radiotherapy. Physics in Medicine & Biology, 2020.

2019

• D M Muinck Keizer, L G W Kerkmeijer, M Maspero, A Andreychenko, J R N Zyp, C A T Berg, B W Raaymakers, J J W Lagendijk, and J C J Boer. Soft-tissue prostate intrafraction motion tracking in 3D cine-MR for MR-guided radiotherapy. Physics in Medicine & Biology, 2019.
• Tom Bruijnen, Bjorn Stemkens, Cornelis Antonius Theodorus Berg, and Rob Hendrikus Nicolaas Tijssen. Prospective GIRF‐based RF phase cycling to reduce eddy current‐induced steady‐state disruption in bSSFP imaging. Magnetic Resonance in Medicine, 2019.
• Christopher Kurz, Matteo Maspero, Mark H F Savenije, Guillaume Landry, Florian Kamp, Marco Pinto, Minglun Li, Katia Parodi, Claus Belka, and Cornelis A T Berg. CBCT correction using a cycle-consistent generative adversarial network and unpaired training to enable photon and proton dose calculation. Physics in Medicine & Biology, 2019.
• Mateusz C. Florkow, Frank Zijlstra, Koen Willemsen, Matteo Maspero, Cornelis A. T. Berg, Linda G. W. Kerkmeijer, René M. Castelein, Harrie Weinans, Max A. Viergever, Marijn Stralen, and Peter R. Seevinck. Deep learning–based MR‐to‐CT synthesis: The influence of varying gradient echo–based MR images as input channels. Magnetic Resonance in Medicine, 2019.
• Christiaan C. Stolk and Alessandro Sbrizzi. Understanding the Combined Effect of $k$ -Space Undersampling and Transient States Excitation in MR Fingerprinting Reconstructions. IEEE Transactions on Medical Imaging, 2019.
• Soraya Gavazzi, Yulia Shcherbakova, Lambertus W. Bartels, Lukas J. A. Stalpers, Jan J. W. Lagendijk, Hans Crezee, Cornelis A. T. Berg, and Astrid L. H. M. W. Lier. Transceive phase mapping using the PLANET method and its application for conductivity mapping in the brain. Magnetic Resonance in Medicine, 2019.
• E.F. Meliadò, A.J.E Raaijmakers, A. Sbrizzi, B.R. Steensma, M. Maspero, M.H.F. Savenije, P.R. Luijten, and C.A.T. Berg. A deep learning method for image‐based subject‐specific local SAR assessment. Magnetic Resonance in Medicine, 2019.
• Peter R. S. Stijnman, Janot P. Tokaya, Jeroen Gemert, Peter R. Luijten, Josien P. W. Pluim, Wyger M. Brink, Rob F. Remis, Cornelis A. T. Berg, and Alexander J. E. Raaijmakers. Accelerating implant RF safety assessment using a low‐rank inverse update method. Magnetic Resonance in Medicine, 2019.
• Stefan E Zijlema, Rob H N Tijssen, Victor N Malkov, Luca Dijk, Sara L Hackett, Jan G M Kok, Jan J W Lagendijk, and Cornelis A T Berg. Design and feasibility of a flexible, on-body, high impedance coil receive array for a 1.5 T MR-linac. Physics in Medicine & Biology, 2019.
• Anna M. Dinkla, Mateusz C. Florkow, Matteo Maspero, Mark H. F. Savenije, Frank Zijlstra, Patricia A. H. Doornaert, Marijn Stralen, Marielle E. P. Philippens, Cornelis A. T. Berg, and Peter R. Seevinck. Dosimetric evaluation of synthetic CT for head and neck radiotherapy generated by a patch‐based three‐dimensional convolutional neural network. Medical Physics, 2019.
• Stefano Mandija, Federico D'Agata, Robin J. M. Navest, Alessandro Sbrizzi, Rob H. N. Tijssen, Marielle E. P. Philippens, Cornelis P. J. Raaijmakers, Enrica Seravalli, Joost J. C. Verhoeff, Jan J. W. Lagendijk, and Cornelis A. T. Berg. Brain and Head-and-Neck MRI in Immobilization Mask: A Practical Solution for MR-Only Radiotherapy. Frontiers in Oncology, 2019.
• R. J. M. Navest, S. Mandija, A. Andreychenko, A. J. E. Raaijmakers, J. J. W. Lagendijk, and C. A. T. Berg. Understanding the physical relations governing the noise navigator. Magnetic Resonance in Medicine, 2019.
• A. Dinkla, M. Florkow, M. Maspero, M. Savenije, F. Zijlstra, P. Doornaert, M. Van Stralen, M. Philippens, P. Seevinck, and N. Van Berg. OC-0515 Synthetic CT generation for Head and Neck radiotherapy by a 3D convolutional neural network. Radiotherapy and Oncology, 2019.
• D. De Muinck Keizer, L.G.W. Kerkmeijer, M. Maspero, J.R.N. Van Zyp, C.A.T. Van Berg, B.W. Raaymakers, J.J.W. Lagendijk, and H.C.J. De Boer. OC-0410 Soft-tissue based on-line prostate motion assessment in 4D Cine-MR for MR-Linac treatments. Radiotherapy and Oncology, 2019.
• C. Kurz, M. Maspero, M.H.F. Savenije, G. Landry, F. Kamp, M. Li, K. Parodi, C. Belka, and C.A.T. Van Berg. OC-0513 Cone-beam CT intensity correction using a generative adversarial network and unpaired training. Radiotherapy and Oncology, 2019.
• M. Maspero, M.H.F. Savenije, T.C.F. Van Heijst, A.N.T.J. Kotte, A.C. Houweling, J.J.C. Verhoeff, P.R. Seevinck, and C.A.T. Van Berg. EP-2017 GANs covert CBCT to CT for head-neck, lung and breast: paired vs unpaired; single-site vs generic. Radiotherapy and Oncology, 2019.
• Mateusz C. Florkow, Frank Zijlstra, Linda G. W. Kerkmeijer, Matteo Maspero, Cornelis A. T. Berg, Marijn Stralen, and Peter R. Seevinck. The impact of MRI-CT registration errors on deep learning-based synthetic CT generation. Medical Imaging 2019: Image Processing, 2019.
• Bjorn Stemkens, Fieke M Prins, Tom Bruijnen, Linda G W Kerkmeijer, Jan J W Lagendijk, Cornelis A T Berg, and Rob H N Tijssen. A dual-purpose MRI acquisition to combine 4D-MRI and dynamic contrast-enhanced imaging for abdominal radiotherapy planning. Physics in Medicine & Biology, 2019.
• Tom Bruijnen, Bjorn Stemkens, Jan J W Lagendijk, Cornelis A T Berg, and Rob H N Tijssen. Multiresolution radial MRI to reduce IDLE time in pre-beam imaging on an MR-Linac (MR-RIDDLE). Physics in Medicine & Biology, 2019.
• Tom Bruijnen, Bjorn Stemkens, Chris H.J. Terhaard, Jan J.W. Lagendijk, Cornelis P.J. Raaijmakers, and Rob H.N. Tijssen. Intrafraction motion quantification and planning target volume margin determination of head-and-neck tumors using cine magnetic resonance imaging. Radiotherapy and Oncology, 2019.

2018

• Patrick S. Fuchs, Stefano Mandija, Peter R. S. Stijnman, Wyger M. Brink, Cornelis A. T. Berg, and Rob F. Remis. First-Order Induced Current Density Imaging and Electrical Properties Tomography in MRI. IEEE Transactions on Computational Imaging, 2018.
• Anna M. Dinkla, Jelmer M. Wolterink, Matteo Maspero, Mark H.F. Savenije, Joost J.C. Verhoeff, Enrica Seravalli, Ivana Išgum, Peter R. Seevinck, and Cornelis A.T. Berg. MR-Only Brain Radiation Therapy: Dosimetric Evaluation of Synthetic CTs Generated by a Dilated Convolutional Neural Network. International Journal of Radiation Oncology*Biology*Physics, 2018.
• L.G.W. Kerkmeijer, M. Maspero, G.J. Meijer, J.R.N. Zyp, H.C.J. Boer, and C.A.T. Berg. Magnetic Resonance Imaging only Workflow for Radiotherapy Simulation and Planning in Prostate Cancer. Clinical Oncology, 2018.
• Ettore F. Meliadò, Cornelis A.T. Berg, Peter R. Luijten, and Alexander J.E. Raaijmakers. Intersubject specific absorption rate variability analysis through construction of 23 realistic body models for prostate imaging at 7T. Magnetic Resonance in Medicine, 2018.
• Matteo Maspero, Mark H F Savenije, Anna M Dinkla, Peter R Seevinck, Martijn P W Intven, Ina M Jurgenliemk-Schulz, Linda G W Kerkmeijer, and Cornelis A T Berg. Dose evaluation of fast synthetic-CT generation using a generative adversarial network for general pelvis MR-only radiotherapy. Physics in Medicine & Biology, 2018.
• Christopher Kurz, David C. Hansen, Mark H.F. Savenije, Guillaume Landry, Matteo Maspero, Florian Kamp, Katia Parodi, Claus Belka, and Cornelius Berg. [OA127] Cone-beam CT intensity correction for adaptive radiotherapy of the prostate using deep learning. Physica Medica, 2018.
• Robin J. M. Navest, Anna Andreychenko, Jan J. W. Lagendijk, and Cornelis A. T. Berg. Prospective Respiration Detection in Magnetic Resonance Imaging by a Non-Interfering Noise Navigator. IEEE Transactions on Medical Imaging, 2018.
• Matteo Maspero, Marcus D. Tyyger, Rob H.N. Tijssen, Peter R. Seevinck, Martijn P.W. Intven, and Cornelis A.T. Berg. Feasibility of magnetic resonance imaging-only rectum radiotherapy with a commercial synthetic computed tomography generation solution. Physics and Imaging in Radiation Oncology, 2018.
• Matteo Maspero, Peter R. Seevinck, Nicole J. W. Willems, Gonda G. Sikkes, Geja J. Kogel, Hans C. J. Boer, Jochem R. N. Zyp, and Cornelis A. T. Berg. Evaluation of gold fiducial marker manual localisation for magnetic resonance-only prostate radiotherapy. Radiation Oncology, 2018.
• Soraya Gavazzi, Paolo Limone, Giovanni De Rosa, Filippo Molinari, and Giuseppe Vecchi. Comparison of microwave dielectric properties of human normal, benign and malignant thyroid tissues obtained from surgeries: a preliminary study. Biomedical Physics & Engineering Express, 2018.
• N. Van Berg, M. Maspero, A. Dinkla, M. Savenije, G. Meijer, P. Seevinck, J. Lagendijk, and B. Raaymakers. SP-0659: MRI techniques for MR-only simulation. Radiotherapy and Oncology, 2018.
• A.M. Dinkla, J.M. Wolterink, M. Maspero, M.H.F. Savenije, J.J.C. Verhoeff, I. Isgum, P.R. Seevinck, J.J.W. Lagendijk, and C.A.T. Van Berg. OC-0293: Dosimetric evaluation of deep learning based synthetic-CT generation for MR-only brain radiotherapy. Radiotherapy and Oncology, 2018.
• C. Kurz, M. Maspero, G. Landry, C. Belka, K. Parodi, P.R. Seevinck, B.W. Raaymakers, and C.A.T. Van Berg. PO-0966: Translation of a certified MR-only synthetic CT solution for prostate from photon to proton therapy. Radiotherapy and Oncology, 2018.
• M. Maspero, M.D. Tyyger, P.R. Seevinck, R.H.N. Tijssen, M.P.W. Intven, and C.A.T. Van Berg. EP-2079: Feasibility of MR-only rectum radiotherapy using a commercial prostate sCT generation solution. Radiotherapy and Oncology, 2018.
• M.H.F. Savenije, M. Maspero, A.M. Dinkla, P.R. Seevinck, and C.A.T. Van Berg. OC-0294: MR-based synthetic CT with conditional Generative Adversarial Network for prostate RT planning. Radiotherapy and Oncology, 2018.
• Alessandro Sbrizzi, Oscar Heide, Martijn Cloos, Annette Toorn, Hans Hoogduin, Peter R. Luijten, and Cornelis A.T. Berg. Fast quantitative MRI as a nonlinear tomography problem. Magnetic Resonance Imaging, 2018.
• Alena V. Shchelokova, Cornelis A.T. Berg, Dmitry A. Dobrykh, Stanislav B. Glybovski, Mikhail A. Zubkov, Ekaterina A. Brui, Dmitry S. Dmitriev, Alexander V. Kozachenko, Alexander Y. Efimtcev, Andrey V. Sokolov, Vladimir A. Fokin, Irina V. Melchakova, and Pavel A. Belov. Volumetric wireless coil based on periodically coupled split‐loop resonators for clinical wrist imaging. Magnetic Resonance in Medicine, 2018.
• Stan J Hoogcarspel, Stefan E Zijlema, Rob H N Tijssen, Linda G W Kerkmeijer, Ina M Jürgenliemk-Schulz, Jan J W Lagendijk, and Bas W Raaymakers. Characterization of the first RF coil dedicated to 1.5 T MR guided radiotherapy. Physics in Medicine & Biology, 2018.

2017

• Anneloes Boer, Tim Leiner, Eva E. Vink, Peter J. Blankestijn, and Cornelis A.T. Berg. Modified dixon‐based renal dynamic contrast‐enhanced MRI facilitates automated registration and perfusion analysis. Magnetic Resonance in Medicine, 2017.
• Stefano Mandija, Alessandro Sbrizzi, Ulrich Katscher, Peter R. Luijten, and Cornelis A.T. Berg. Error analysis of helmholtz‐based MR‐electrical properties tomography. Magnetic Resonance in Medicine, 2017.
• Matteo Maspero, Cornelis A T Berg, Guillaume Landry, Claus Belka, Katia Parodi, Peter R Seevinck, Bas W Raaymakers, and Christopher Kurz. Feasibility of MR-only proton dose calculations for prostate cancer radiotherapy using a commercial pseudo-CT generation method. Physics in Medicine & Biology, 2017.
• Bart R. Steensma, Ingmar J. Voogt, Tim Leiner, Peter R. Luijten, Jesse Habets, Dennis W. J. Klomp, Cornelis A. T. Berg, and Alexander J. E. Raaijmakers. An 8-channel Tx/Rx dipole array combined with 16 Rx loops for high-resolution functional cardiac imaging at 7 T. Magnetic Resonance Materials in Physics, Biology and Medicine, 2017.
• Matteo Maspero, Cornelis A T Berg, Frank Zijlstra, Gonda G Sikkes, Hans C J Boer, Gert J Meijer, Linda G W Kerkmeijer, Max A Viergever, Jan J W Lagendijk, and Peter R Seevinck. Evaluation of an automatic MR-based gold fiducial marker localisation method for MR-only prostate radiotherapy. Physics in Medicine & Biology, 2017.
• Bjorn Stemkens, Thomas Benkert, Hersh Chandarana, Mark E. Bittman, Cornelis A.T. Van Berg, Jan J.W. Lagendijk, Daniel K. Sodickson, Rob H.N. Tijssen, and Kai Tobias Block. Adaptive bulk motion exclusion for improved robustness of abdominal magnetic resonance imaging. NMR in Biomedicine, 2017.
• Bjorn Stemkens, Markus Glitzner, Charis Kontaxis, Baudouin Denis Senneville, Fieke M Prins, Sjoerd P M Crijns, Linda G W Kerkmeijer, Jan J W Lagendijk, Cornelis A T Berg, and Rob H N Tijssen. Effect of intra-fraction motion on the accumulated dose for free-breathing MR-guided stereotactic body radiation therapy of renal-cell carcinoma. Physics in Medicine & Biology, 2017.
• A. Andreychenko, B. Denis Senneville, R.J.M. Navest, R.H.N. Tijssen, J.J.W. Lagendijk, and C.A.T. Berg. Respiratory motion model based on the noise covariance matrix of a receive array. Magnetic Resonance in Medicine, 2017.
• Petar I. Petrov, Stefano Mandija, Iris E. C. Sommer, Cornelis A. T. Berg, and Sebastiaan F. W. Neggers. How much detail is needed in modeling a transcranial magnetic stimulation figure-8 coil: Measurements and brain simulations. PLOS ONE, 2017.
• J Crezee, M Bennis, S Gavazzi, Lja Stalpers, Alhmw Lier, and H P Kok. Development of electrical properties tomography for hyperthermia treatment planning. 2017 First IEEE MTT-S International Microwave Bio Conference (IMBIOC), 2017.
• Ulrich Katscher and Cornelius A.T. Berg. Electric properties tomography: Biochemical, physical and technical background, evaluation and clinical applications. NMR in Biomedicine, 2017.
• Yulia Shcherbakova, Cornelis A.T. Berg, Chrit T.W. Moonen, and Lambertus W. Bartels. PLANET: An ellipse fitting approach for simultaneous T1 and T2 mapping using phase‐cycled balanced steady‐state free precession. Magnetic Resonance in Medicine, 2017.
• Anna Andreychenko, Petra S. Kroon, Matteo Maspero, Ina Jürgenliemk-Schulz, Astrid A.C. De Leeuw, Marnix G.E.H. Lam, Jan J.W. Lagendijk, and Cornelis A.T. Berg. The feasibility of semi-automatically generated red bone marrow segmentations based on MR-only for patients with gynecologic cancer. Radiotherapy and Oncology, 2017.
• H.D. Heerkens, W.A. Hall, X.A. Li, P. Knechtges, E. Dalah, E.S. Paulson, C.A.T. Berg, G.J. Meijer, E.J. Koay, C.H. Crane, K. Aitken, M. Vulpen, and B.A. Erickson. Recommendations for MRI-based contouring of gross tumor volume and organs at risk for radiation therapy of pancreatic cancer. Practical Radiation Oncology, 2017.
• J.P. Tokaya, A.J.E. Raaijmakers, P.R. Luijten, J.F. Bakker, and C.A.T. Berg. MRI‐based transfer function determination for the assessment of implant safety. Magnetic Resonance in Medicine, 2017.
• Matteo Maspero, Peter R Seevinck, Gerald Schubert, Michaela A U Hoesl, Bram Asselen, Max A Viergever, Jan J W Lagendijk, Gert J Meijer, and Cornelis A T Berg. Quantification of confounding factors in MRI-based dose calculations as applied to prostate IMRT. Physics in Medicine and Biology, 2017.

2016

• Stefano Mandija, Petar I. Petrov, Sebastian F.W. Neggers, Peter R. Luijten, and Cornelis A.T. Berg. MR‐based measurements and simulations of the magnetic field created by a realistic transcranial magnetic stimulation (TMS) coil and stimulator. NMR in Biomedicine, 2016.
• Ronald Mooiweer, Alessandro Sbrizzi, Alexander J.E. Raaijmakers, Cornelis A.T. Berg, Peter R. Luijten, and Hans Hoogduin. Combining a reduced field of excitation with SENSE‐based parallel imaging for maximum imaging efficiency. Magnetic Resonance in Medicine, 2016.
• Anna A. Hurshkainen, Tatyana A. Derzhavskaya, Stanislav B. Glybovski, Ingmar J. Voogt, Irina V. Melchakova, Cornelis A.T. Berg, and Alexander J.E. Raaijmakers. Element decoupling of 7 T dipole body arrays by EBG metasurface structures: Experimental verification. Journal of Magnetic Resonance, 2016.
• M Maspero, PR Seevinck, G Schubert, M Hoesl, GJ Meijer, MA Viergever, JJW Lagendijk, and CAT Berg. MO-FG-CAMPUS-JeP2-04: Comparison Study for CT and MR-Only Prostate IMRT Treatment Planning: A Framework for the Estimation of Relative Contribution of Body Contour Discrepancies Tissue Stratification and HU-RED Conversion to the Overall Dose Difference. Medical Physics, 2016.
• Bjorn Stemkens, Rob H N Tijssen, Baudouin Denis Senneville, Jan J W Lagendijk, and Cornelis A T Berg. Image-driven, model-based 3D abdominal motion estimation for MR-guided radiotherapy. Physics in Medicine and Biology, 2016.
• A. Henning, W. Koning, A. Fuchs, A. Raaijmakers, J. J. Bluemink, C. A. T. Berg, V. O. Boer, and D. W. J. Klomp. 1H MRS in the human spinal cord at 7 T using a dielectric waveguide transmitter, RF shimming and a high density receive array. NMR in Biomedicine, 2016.
• Remco Arts, Ilona Hartog, Stefan E. Zijlema, Vito Thijssen, Stan H. E. Beelen, and Maarten Merkx. Detection of Antibodies in Blood Plasma Using Bioluminescent Sensor Proteins and a Smartphone. Analytical Chemistry, 2016.
• Edmond Balidemaj, Cornelis A. T. Berg, Astrid L. H. M. W. Lier, Aart J. Nederveen, Lukas J. A. Stalpers, Hans Crezee, and Rob F. Remis. B1-based SAR reconstruction using contrast source inversion–electric properties tomography (CSI-EPT). Medical & Biological Engineering & Computing, 2016.
• CheukKai Hui, Zhifei Wen, Bjorn Stemkens, R H N Tijssen, C A T Berg, Ken-Pin Hwang, and Sam Beddar. 4D MR imaging using robust internal respiratory signal. Physics in Medicine and Biology, 2016.
• M. Maspero, G. Schubert, M. Lindstrom, M. Hoesl, P.R. Seevinck, G.J. Meijer, M.A. Viergever, J.J.W. Lagendijk, and C.A.T. Van Berg. EP-1841: Dose comparison study for CT and MR-only prostate IMRT treatment planning. Radiotherapy and Oncology, 2016.
• F.F.J. Simonis, A.J.E. Raaijmakers, J.J.W. Lagendijk, and C.A.T. Berg. Validating subject-specific RF and thermal simulations in the calf muscle using MR-based temperature measurements. Magnetic Resonance in Medicine, 2016.
• Edmond Balidemaj, Henny Petra Kok, Gerben Schooneveldt, Astrid L.H.M.W. Lier, Rob F. Remis, Lukas J.A. Stalpers, Henrike Westerveld, Aart J. Nederveen, Cornelis A.T. Berg, and Johannes Crezee. Hyperthermia treatment planning for cervical cancer patients based on electrical conductivity tissue properties acquiredin vivowith EPT at 3 T MRI. International Journal of Hyperthermia, 2016.
• E Balidemaj, P Boer, A L H M W Lier, R F Remis, L J A Stalpers, G H Westerveld, A J Nederveen, C A T Berg, and J Crezee. In vivoelectric conductivity of cervical cancer patients based on $B_1^+$ maps at 3T MRI. Physics in Medicine and Biology, 2016.
• A. Andreychenko, A.J.E. Raaijmakers, A. Sbrizzi, S.P.M. Crijns, J.J.W. Lagendijk, P.R. Luijten, and C.A.T. Berg. Thermal noise variance of a receive radiofrequency coil as a respiratory motion sensor. Magnetic Resonance in Medicine, 2016.
• Alessandro Sbrizzi, Hans Hoogduin, Joseph V. Hajnal, Cornelis A. T. Berg, Peter R. Luijten, and Shaihan J. Malik. Optimal control design of turbo spin‐echo sequences with applications to parallel‐transmit systems. Magnetic Resonance in Medicine, 2016.
• Alexey P. Slobozhanyuk, Alexander N. Poddubny, Alexander J. E. Raaijmakers, Cornelis A. T. Berg, Alexander V. Kozachenko, Irina A. Dubrovina, Irina V. Melchakova, Yuri S. Kivshar, and Pavel A. Belov. Enhancement of Magnetic Resonance Imaging with Metasurfaces. Advanced Materials, 2016.